BioResource MetaDatabase

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AGRO http://metadb.riken.jp/bioresource/ontology/AGRO: Agronomy Ontology
(Original site: http://www.obofoundry.org/ontology/agro.html)
CHEBI http://metadb.riken.jp/bioresource/ontology/CHEBI: Chemical Entities of Biological Interest Ontology
(Original site: https://www.ebi.ac.uk/chebi/)
CL http://metadb.riken.jp/bioresource/ontology/CL: Cell Ontology
(Original site: https://obophenotype.github.io/cell-ontology/)
CSSO http://metadb.riken.jp/bioresource/ontology/CSSO: Clinical Signs and Symptoms Ontology
(Original site: https://bioportal.bioontology.org/ontologies/CSSO)
CVO http://metadb.riken.jp/bioresource/ontology/CVO: Crop Vocabulary
(Original site: http://agroportal.lirmm.fr/ontologies/CVO)
DOID http://metadb.riken.jp/bioresource/ontology/DOID: Human Disease Ontology
(Original site: http://www.obofoundry.org/ontology/doid.html)
EDAM http://metadb.riken.jp/bioresource/ontology/EDAM: EDAM bioinformatics operations, types of data, data formats, identifiers, and topics
(Original site: http://edamontology.org)
FALDO http://metadb.riken.jp/bioresource/ontology/FALDO: Feature Annotation Location Description Ontology
(Original site: http://biohackathon.org/resource/faldo)
GO http://metadb.riken.jp/bioresource/ontology/GO: Gene Ontology
(Original site: https://bioportal.bioontology.org/ontologies/GO)
GO_plus http://metadb.riken.jp/bioresource/ontology/GO_plus: Gene Ontology Plus
(Original site: https://geneontology.org/)
HOIP http://metadb.riken.jp/bioresource/ontology/HOIP: Homeostasis imbalance process ontology
(Original site: https://bioportal.bioontology.org/ontologies/HOIP)
MA http://metadb.riken.jp/bioresource/ontology/MA: Mouse Adult Gross Anatomy
(Original site: https://bioportal.bioontology.org/ontologies/MA)
MCCV http://metadb.riken.jp/bioresource/ontology/MCCV: Microbial Culture Collection Vocabulary
(Original site: https://bioportal.bioontology.org/ontologies/MCCV)
MEO http://metadb.riken.jp/bioresource/ontology/MEO: Metagenome and Microbes Environmental Ontology
(Original site: https://bioportal.bioontology.org/ontologies/MEO)
MONDO http://metadb.riken.jp/bioresource/ontology/MONDO: Mondo Disease Ontology
(Original site: http://obofoundry.org/ontology/mondo.html)
MONDO20220410 http://metadb.riken.jp/bioresource/ontology/MONDO20220410: Mondo Disease Ontology20220410
(Original site: https://github.com/monarch-initiative/mondo)
MP http://metadb.riken.jp/bioresource/ontology/MP: Mammalian Phenotype Ontology
(Original site: https://bioportal.bioontology.org/ontologies/MP)
MP_international http://metadb.riken.jp/bioresource/ontology/MP_international: Mammalian Phenotype Ontology International
(Original site: https://www.informatics.jax.org/vocab/mp_ontology/)
NANDO http://metadb.riken.jp/bioresource/ontology/NANDO: Nanbyo Disease Ontology
(Original site: http://nanbyodata.jp/)
NANDO2 http://metadb.riken.jp/bioresource/ontology/NANDO2: Nanbyo Disease Ontology2
(Original site: http://nanbyodata.jp/)
NCBITaxon http://metadb.riken.jp/bioresource/ontology/NCBITaxon: NCBI Organismal Classification (NCBITaxon)
(Original site: http://wiki.obofoundry.org/wiki/index.php/NCBITaxon:Main_Page)
NCIT http://metadb.riken.jp/bioresource/ontology/NCIT: National Cancer Institute Thesaurus
(Original site: https://ncit.nci.nih.gov/ncitbrowser/)
OMIM http://metadb.riken.jp/bioresource/ontology/OMIM: Online Mendelian Inheritance in Man
(Original site: https://bioportal.bioontology.org/ontologies/OMIM)
ORDO http://metadb.riken.jp/bioresource/ontology/ORDO: OrphanetRareDiseaseOntology
(Original site: https://github.com/Orphanet/Orphadata_aggregated)
PATO http://metadb.riken.jp/bioresource/ontology/PATO: Phenotypic Quality Ontology
(Original site: https://bioportal.bioontology.org/ontologies/PATO)
PDO http://metadb.riken.jp/bioresource/ontology/PDO: Pathogenic Disease Ontology
(Original site: https://bioportal.bioontology.org/ontologies/PDO)
PO http://metadb.riken.jp/bioresource/ontology/PO: Plant Ontology
(Original site: http://planteome.org)
PR http://metadb.riken.jp/bioresource/ontology/PR: Protein Ontology
(Original site: https://proconsortium.org/)
SDGs http://metadb.riken.jp/bioresource/ontology/SDGs: Sustainable Development Goals ontology
SO http://metadb.riken.jp/bioresource/ontology/SO: Sequence Types and Features Ontology
(Original site: http://www.sequenceontology.org/)
TXPO http://metadb.riken.jp/bioresource/ontology/TXPO: TOXic Process Ontology
(Original site: https://toxpilot.nibiohn.go.jp/)
dev_MONDO http://metadb.riken.jp/bioresource/ontology/dev_MONDO: dev_Mondo Disease Ontology
(Original site: https://www.ebi.ac.uk/ols/ontologies/mondo)
hp http://metadb.riken.jp/bioresource/ontology/hp: Human Phenotype Ontology
(Original site: https://hpo.jax.org/)
uPheno http://metadb.riken.jp/bioresource/ontology/uPheno: Unified phenotype ontology
(Original site: https://obofoundry.org/ontology/upheno.html)
uberon http://metadb.riken.jp/bioresource/ontology/uberon: Uberon multi-species anatomy ontology
(Original site: http://purl.obolibrary.org/obo/uberon.owl)

BioResource MetaDatabase

BioResource MetaDatabase by RIKEN BRC is licensed under a Creative Commons Attribution 4.0 International License.
If you use data from this database, please be sure attribute this database as follows: "BioResource Metadatabase (https://knowledge.brc.riken.jp/) © RIKEN BRC licensed under CC Attribution 4.0 International".
The Bioresource MetaDatabase integrates the BRC's research results using the following external datasets.

OMA (Orthologs) licensed under CC Attribution-Share Alike 2.5.

Bgee (Gene expression) licensed under CC0.

DisGeNET (Disease-gene interaction) licensed under Attribution-NonCommercial-ShareAlike 4.0 International.

KEGG MEDICUS © Minoru Kanehisa ( Institute for Chemical Research, Kyoto University) licensed under CC Attribution-Share Alike 4.0 International.

About RIKEN Meta Database

This database portal site is used to provide information on RIKEN's various life science databases to order to help researchers around the world make full use of RIKEN's research results.

The database provides life-science data in the bases of standardized metadata techniques including semantic web and Resource Description Framework (RDF).

W3C Dataset Descriptions: HCLS Community Profile

HCLSProfile_MataDB_ALL.ttl

Long-term recommendations for RIKEN's life sciences database platform (final report)

The direction and implementation guidelines for RIKEN databases and metadata maintenance have been discussed at the Database Working Group established within the Bioinformatics Exploratory Committee which examines technologies related to RIKEN's bioinformatics. The result of the discussion was summarized as 'Long-term recommendations for RIKEN's life sciences database platform (final report)'. The RIKEN MetaDatabase has been developed and published based on this recommendation.

Download the PDF file: LongTermRecommendataions_e.pdf

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