uPheno

Unified phenotype ontology
  • A historic synonym, no longer encouraged37
  • Anna Maria Masci0
  • BRAND NAME0
  • BrainName official abbreviation0
  • Christopher J. Mungall450
  • David Osumi-Sutherland7
  • FORMULA0
  • INN0
  • IUPAC NAME0
  • InChI0
  • InChIKey0
  • James P. Balhoff3
  • Lindsay G Cowell0
  • SMILES0
  • Shawn Zheng Kai Tan7
  • Systematic synonym15
  • Systematic synonym0
  • Tirari-Sturt Stony Desert Ecoregion0
  • UK spelling976
  • a mis-spelling that is in common use and thus recorded7
  • a synonym made on the basis of a possibly homologous structure in another species13
  • a systematic synonym used as the base name for design patterns19
  • abbreviation554
  • abbreviation228
  • abbreviation1
  • actions_notes1
  • activity directly negatively regulates activity of0
  • activity directly positively regulates activity of0
  • activity directly regulates activity of2
  • acts on population of85
  • acts upstream of6
  • acts upstream of or within7
  • acts upstream of or within, negative effect1
  • acts upstream of or within, positive effect1
  • acts upstream of, negative effect0
  • acts upstream of, positive effect0
  • allelic_requirement0
  • anterior_to30
  • anteriorly connected to55
  • approximately perpendicular to2
  • axiom_lost_from_external_ontology191
  • bearer of202
  • biomechanically related to4
  • blood_and_immune_upper_slim0
  • bounding layer of127
  • capable of negatively regulating0
  • capable of positively regulating0
  • capable of regulating2
  • causal agent in process6
  • causal relation between material entities3
  • causal relation between processes2
  • causal relation between material entity and a process2
  • causally downstream of or within3
  • causally influenced by1
  • causally influences5
  • causally upstream of or within9
  • causally upstream of or within, negative effect2
  • causally upstream of or within, positive effect2
  • causally upstream of, negative effect2
  • causally upstream of, positive effect2
  • channel for29
  • channels_from21
  • channels_into18
  • composed primarily of757
  • conduit for0
  • connected to245
  • connects809
  • consider0
  • contained_in0
  • contributes to morphology of632
  • contributor1
  • contributor0
  • correlated with1
  • correlates_with1
  • creator1
  • database_cross_reference20388
  • date0
  • decreased in magnitude relative to91
  • decreased_in_magnitude_relative_to3
  • deep_to15
  • defined by inverse16
  • defined class1
  • definition80435
  • depends on2
  • depicted by1
  • derived by descent from2
  • derived from resource1
  • description6
  • determined by83
  • determined by part of6
  • determines1
  • development_notes57
  • different in magnitude relative to3
  • different_in_magnitude_relative_to4
  • directly negatively regulated by1
  • directly negatively regulates5
  • directly positively regulated by1
  • directly positively regulates5
  • directly regulated by3
  • directly regulates14
  • discarded/obsoleted synonym4
  • disease has feature0
  • disease relationship1
  • display label0
  • distal to7
  • distally connected to59
  • distalmost part of15
  • drains133
  • dubious or contested synonym13
  • during639
  • eco subset55
  • enables subfunction0
  • ends5
  • ends with14
  • example of usage1
  • existence ends at start of3
  • existence ends during39
  • existence ends during or before596
  • existence ends with11
  • existence overlaps604
  • existence starts and ends during19
  • existence starts at end of3
  • existence starts during22
  • existence starts during or after1481
  • existence starts with13
  • exists_during1411
  • expand expression to0
  • expert consultation and attribution required2
  • extends_fibers_into173
  • external_comment26
  • external_definition1784
  • external_ontology_notes512
  • eye_upper_slim0
  • filtered through5
  • finishes axis6
  • fma_set_term1
  • function_notes16
  • general_cell_types_upper_slim0
  • happens during1329
  • happens_during1718
  • has branching part3
  • has component activity3
  • has component process2
  • has cross section6
  • has derived by descendant2
  • has effector activity7
  • has functional parent408
  • has habitat3
  • has high plasma membrane amount67
  • has input358
  • has ligand2
  • has low plasma membrane amount60
  • has member117
  • has modifier77904
  • has muscle antagonist42
  • has negative regulatory component activity1
  • has output38
  • has parent hydride84
  • has part structure that is capable of0
  • has part that occurs in4
  • has phenotype or disease1
  • has positive regulatory component activity1
  • has primary input272
  • has primary input or output154
  • has primary output113
  • has quality287
  • has regulatory component activity3
  • has relative magnitude80
  • has role4251
  • has skeleton91
  • has target end location420
  • has target start location32
  • has upheno source54769
  • has_alternative_id4
  • has_broad_synonym2068
  • has_constituent_monomer0
  • has_cross_section3
  • has_exact_synonym77804
  • has_gene_template463
  • has_narrow_synonym6969
  • has_no_connections_with0
  • has_not_completed0
  • has_obo_format_version0
  • has_obo_namespace0
  • has_output0
  • has_output65
  • has_related_synonym41913
  • has_relational_adjective0
  • has_scope0
  • has_synonym_type1
  • helper property (not for use in curation)1
  • homology_notes1097
  • immediate transformation of129
  • immediately_deep_to44
  • immediately_superficial_to21
  • implements_design_pattern0
  • in anterior side of17
  • in central side of0
  • in deep part of10
  • in distal side of8
  • in dorsal side of12
  • in posterior side of21
  • in proximal side of7
  • in superficial part of8
  • in taxon343
  • in ventral side of10
  • in_innermost_side_of2
  • in_lateral_side_of191
  • in_outermost_side_of2
  • in_subset0
  • increased in magnitude relative to92
  • increased_in_magnitude_relative_to3
  • increases_population_size_of0
  • indicates that a synonym is used in an inconsistent or confusing way, typically between species133
  • indirectly_supplies9
  • inheres in94253
  • inheres in part of7865
  • innervated_by114
  • innervates150
  • interaction relation helper property2
  • interacts with694830
  • intersects midsagittal plane of30
  • involved in negative regulation of0
  • involved in or involved in regulation of2
  • involved in positive regulation of0
  • involved in regulation of4
  • ipsilateral to2
  • is a defining property chain axiom0
  • is a defining property chain axiom where second argument is reflexive0
  • is active in2
  • is conjugate acid of743
  • is conjugate base of744
  • is direct form of0
  • is enantiomer of266
  • is homeomorphic for0
  • is indirect form of0
  • is kinase activity1
  • is negative form of0
  • is opposite of0
  • is positive form of0
  • is substituent group from34
  • is symbiosis1
  • is tautomer of258
  • is ubiquitination1
  • label2
  • label approved by the SynGO project23
  • lacks_part0
  • lacks_plasma_membrane_part0
  • latin term3226
  • layer part of2
  • layperson term8167
  • left of2
  • license1
  • location_notes1
  • logical-definition-view-relation0
  • lumen of5
  • luminal space of152
  • molecular interaction relation helper property2
  • molecularly interacts with2
  • named class expression1
  • negatively regulates characteristic2
  • never in taxon113
  • obsolete has active participant12
  • obsolete related via dependence to0
  • occurrent part of1
  • occurs across1
  • occurs_at339
  • opposite to5
  • orthogonal to9
  • out of scope0
  • output of79
  • output_of93
  • page1
  • parallel to0
  • parallel to5
  • partially_surrounded_by8
  • passes through2
  • phalanx number1
  • pharyngeal arch number1
  • phenotype affects entity39166
  • phenotype is associated with entity34024
  • phosphorylates1
  • plural form137
  • plural term719
  • plural term0
  • positively regulates characteristic3
  • postaxialmost part of5
  • posteriorly connected to3
  • preaxialmost part of6
  • preceded_by9
  • precedes3
  • preferred term in the context of comparative anatomy622
  • preferred term when talking about an instance of this class in Homo sapiens93
  • preferred_root0
  • primary affected entity0
  • primary exhibited quality1
  • primary related entity0
  • process has causal agent58
  • produces48
  • protects6
  • provenance_notes1114
  • proximal to9
  • proximally connected to97
  • proximalmost part of15
  • ray number1
  • receives input from1
  • reciprocal of9
  • reciprocal_of8
  • regulates activity of1
  • regulates characteristic3
  • regulates levels of60
  • relation between physical entity and a process or stage3
  • results in acquisition of features of216
  • results in assembly of79
  • results in breakdown of1
  • results in changes to anatomical or cellular structure8
  • results in development of483
  • results in disassembly of38
  • results in fusion of30
  • results in growth of30
  • results in maturation of74
  • results in morphogenesis of305
  • results in movement of155
  • results in organization of118
  • results in transport across28
  • results in transport along25
  • results in transport to from or in22
  • results_in_change_to0
  • results_in_complete_development_of0
  • results_in_death_of0
  • results_in_directed_movement_of0
  • results_in_distribution_of4
  • results_in_fission_of6
  • rhombomere number1
  • rib number2
  • right of2
  • secondary affected entity0
  • sends output to2
  • serially homologous to6
  • sexually_homologous_to11
  • shares ancestor with1
  • shorthand0
  • site_of13
  • skeleton of105
  • spatially disjoint from2
  • starts4
  • starts axis6
  • starts with29
  • starts_during3
  • structure_notes21
  • subdivision of35
  • subset_property119
  • substage of154
  • superficial_to18
  • supplies181
  • surface of24
  • surrounded by60
  • surrounds91
  • synonym that is inappropriate for amniotes5
  • synonym that is inappropriate for mammals2
  • synonym typically used in the context of vertebrate anatomy4
  • synonym typically used in the context of human anatomy1
  • synonym_type_property46
  • taxon_notes256
  • taxonomic disambiguation443
  • term tracker item0
  • terminology_notes11
  • title1
  • towards4626
  • transformation of57
  • transitively anteriorly connected to2
  • transitively distally connected to2
  • transitively proximally connected to2
  • treat-xrefs-as-equivalent0
  • trunk_part_of2
  • universal1
  • ventral_to9
  • vertebra number1
  • 2D boundary of0
  • Afrotropical Ecoregion22
  • Aldabra Island Xeric Scrub Ecoregion0
  • Antarctic front1
  • Arctic front1
  • Australasia Ecoregion10
  • Carnarvon Xeric Shrublands Ecoregion0
  • Central Ranges Xeric Shrub Ecoregion0
  • Earth2
  • East Saharan Montane Xeric Woodland Ecoregion0
  • Eritrean Coastal Desert Ecoregion0
  • Ethiopian Xeric Grasslands and Shrublands Ecoregion0
  • Gibson Desert Ecoregion0
  • Great Victoria Desert Ecoregion0
  • Hobyo Grassland and Shrubland Ecoregion0
  • Ile Europa and Bassas da India Ecoregion0
  • Indo-Malay Ecoregion2
  • Kalahari Xeric Savanna Ecoregion0
  • Kaokoveld Desert Ecoregion0
  • Madagascar Spiny Thickets Ecoregion0
  • Madagascar Succulent Woodlands Ecoregion0
  • Masai Xeric Grasslands and Shrublands Ecoregion0
  • Nama Karoo Ecoregion0
  • Namib Desert Ecoregion0
  • Namibian Savanna Woodland Ecoregion0
  • Northwestern Thorn Scrub Forests0
  • Nullarbor Plains Xeric Shrubland Ecoregion0
  • OBO foundry unique label0
  • Oman and United Arab Emirates Ecoregion0
  • Oman, Yemen, and Saudi Arabia Ecoregion0
  • Pilbara Shrublands Ecoregion0
  • Red Sea Coastal Desert Ecoregion0
  • Simpson Desert Region0
  • Socotran Archipelago Ecoregion0
  • Sol1
  • Solar radiation0
  • Somali Montane Xeric Woodland Ecoregion0
  • Succulent Karoo Ecoregion0
  • Suni1
  • Thar Desert0
  • The Great Sandy-Tanami Desert Ecoregion0
  • Western Australian Mulga Shrublands Ecoregion0
  • World Ocean1
  • Yemen and Saudi Arabia Ecoregion0
  • Yemen, Saudi Arabia, and Oman Ecoregion0
  • actively participates in1
  • adjacent to383
  • alternative term18
  • alternative term0
  • attached to342
  • attached to part of9
  • axiom holds for all times33
  • axon synapses in3
  • before1
  • before or simultaneous with2
  • branching part of202
  • by_means17
  • camcur0
  • capable of620
  • capable of part of129
  • causally downstream of1
  • causally related to5
  • causally upstream of12
  • confers advantage in6
  • contained in720
  • contains10
  • contains process146
  • continuous with131
  • contributes to0
  • core1
  • curator note41
  • definition source1
  • denoted by1
  • denotes1
  • derived from ancestral fusion of57
  • derives from31
  • derives from part of0
  • derives into1
  • developmentally contributes to1
  • developmentally induced by42
  • developmentally induces1
  • developmentally preceded by6
  • developmentally related to3
  • developmentally replaces12
  • developmentally succeeded by6
  • develops from3552
  • develops from part of9
  • develops in7
  • develops into51
  • device utilizes material0
  • directly develops from7
  • directly develops into2
  • disposition of1
  • dubious for taxon22
  • during which ends1
  • during which starts1
  • ecologically related to2
  • editor note20
  • editor preferred term0
  • elucidation17
  • enabled by10
  • enables27
  • encompasses0
  • ends after1
  • ends during4
  • evolutionarily related to5
  • example0
  • example to be eventually removed1
  • expressed in2
  • expresses5
  • failed exploratory term1
  • fasciculates with6
  • formed as result of15
  • function of0
  • functionally related to16
  • genomically related to2
  • has 2D boundary2
  • has axiom label0
  • has component96
  • has curation status0
  • has dendrite location1
  • has developmental contribution from230
  • has developmental potential involving4
  • has disposition1
  • has end location13
  • has fasciculating neuron projection1
  • has function2
  • has increased age-specific mortality rate1
  • has muscle insertion167
  • has muscle origin157
  • has obsolescence reason0
  • has part623265
  • has participant41
  • has phenotype611824
  • has phenotypic analogue1932
  • has plasma membrane part480
  • has postsynaptic terminal in2
  • has potential to develop into302
  • has potential to developmentally contribute to24
  • has potential to developmentally induce1
  • has potential to directly develop into1
  • has presynaptic terminal in3
  • has sensory dendrite in2
  • has soma location86
  • has start location17
  • has synaptic IO in region3
  • has synaptic terminal in6
  • has synaptic terminal of0
  • has-input3
  • has_age84
  • has_participant21
  • has_specified_output0
  • immediately causally downstream of0
  • immediately causally upstream of2
  • immediately preceded by214
  • immediately precedes2
  • imported from0
  • in branching relationship with3
  • in_response_to40
  • indirectly causally upstream of0
  • indirectly negatively regulates0
  • indirectly positively regulates0
  • indirectly regulates0
  • input of4
  • involved in1020789
  • is about2
  • is_about34
  • is_specified_output_of0
  • located in213
  • location of13
  • logical macro assertion on an annotation property0
  • member of3
  • mereotopologically related to8
  • metadata complete6
  • metadata incomplete2
  • mgpo_editor_note0
  • mutually spatially disjoint with476
  • negatively regulated by2
  • negatively regulates3488
  • nominally disjoint with0
  • occurs in21609
  • organizational term2
  • overlaps660
  • part of58214
  • part of developmental precursor of0
  • part of structure that is capable of2
  • participates in36
  • pending final vetting82
  • phenotype of1
  • placeholder removed2
  • positively correlated with0
  • positively regulated by2
  • positively regulates3485
  • preceded by32
  • precedes33
  • present in taxon82
  • produced by87
  • qualifier4
  • qualifier0
  • quality of0
  • ready for release18
  • receives synaptic input in region4
  • receives synaptic input from neuron0
  • regulated by5
  • regulates4005
  • related via localization to3
  • requires discussion17
  • results in developmental progression of3314
  • results in formation of156
  • results_in1
  • role of0
  • scheduled for obsoletion on or after0
  • sends synaptic output to cell0
  • simultaneous with15
  • spatially coextensive with0
  • synapsed by3
  • synapsed to4
  • temporal interpretation0
  • temporally related to11
  • term editor0
  • term imported1
  • term replaced by0
  • term split1
  • terms merged589
  • to be replaced with external ontology term1
  • tributary of57
  • uncurated1
  • valid_for_go_annotation_extension28
  • valid_for_go_gp2term13
  • valid_for_go_ontology29
  • valid_for_gocam29
  • BRAND NAME283
  • INN606
  • IUPAC NAME2601
  • Synonyms based on current or previous gene name, ORF name, or ordered locus name1312
  • Unique short label curated by PSI-MOD3
  • Unique short label for PRO terms for display purposes; based on orthology921
  • adjacent_to4
  • derives_from13
  • develops_from61
  • end, days post fertilization0
  • end, months post birth0
  • end, years post birth0
  • ends during424
  • expand assertion to0
  • has_part3
  • has_quality11
  • lacks_part273
  • member_of2
  • namespace-id-rule0
  • only_in_taxon1510
  • overlaps3
  • part of100
  • part of97
  • part_of25
  • preceded by87
  • see also7
  • start, days post fertilization0
  • start, months post birth0
  • start, years post birth0
  • starts during1178
URI
http://purl.obolibrary.org/obo/uberon/core#DEPRECATED
label
A historic synonym, no longer encouraged
http://www.w3.org/2000/01/rdf-schema#subPropertyOf
synonym_type_property

Linked from
Axiom (uPheno2)