uPheno
Unified phenotype ontology
A historic synonym, no longer encouraged
37
Anna Maria Masci
0
BRAND NAME
0
BrainName official abbreviation
0
Christopher J. Mungall
450
David Osumi-Sutherland
7
FORMULA
0
INN
0
IUPAC NAME
0
InChI
0
InChIKey
0
James P. Balhoff
3
Lindsay G Cowell
0
SMILES
0
Shawn Zheng Kai Tan
7
Systematic synonym
15
Systematic synonym
0
Tirari-Sturt Stony Desert Ecoregion
0
UK spelling
976
a mis-spelling that is in common use and thus recorded
7
a synonym made on the basis of a possibly homologous structure in another species
13
a systematic synonym used as the base name for design patterns
19
abbreviation
554
abbreviation
228
abbreviation
1
actions_notes
1
activity directly negatively regulates activity of
0
activity directly positively regulates activity of
0
activity directly regulates activity of
2
acts on population of
85
acts upstream of
6
acts upstream of or within
7
acts upstream of or within, negative effect
1
acts upstream of or within, positive effect
1
acts upstream of, negative effect
0
acts upstream of, positive effect
0
allelic_requirement
0
anterior_to
30
anteriorly connected to
55
approximately perpendicular to
2
axiom_lost_from_external_ontology
191
bearer of
202
biomechanically related to
4
blood_and_immune_upper_slim
0
bounding layer of
127
capable of negatively regulating
0
capable of positively regulating
0
capable of regulating
2
causal agent in process
6
causal relation between material entities
3
causal relation between processes
2
causal relation between material entity and a process
2
causally downstream of or within
3
causally influenced by
1
causally influences
5
causally upstream of or within
9
causally upstream of or within, negative effect
2
causally upstream of or within, positive effect
2
causally upstream of, negative effect
2
causally upstream of, positive effect
2
channel for
29
channels_from
21
channels_into
18
composed primarily of
757
conduit for
0
connected to
245
connects
809
consider
0
contained_in
0
contributes to morphology of
632
contributor
1
contributor
0
correlated with
1
correlates_with
1
creator
1
database_cross_reference
20388
date
0
decreased in magnitude relative to
91
decreased_in_magnitude_relative_to
3
deep_to
15
defined by inverse
16
defined class
1
definition
80435
depends on
2
depicted by
1
derived by descent from
2
derived from resource
1
description
6
determined by
83
determined by part of
6
determines
1
development_notes
57
different in magnitude relative to
3
different_in_magnitude_relative_to
4
directly negatively regulated by
1
directly negatively regulates
5
directly positively regulated by
1
directly positively regulates
5
directly regulated by
3
directly regulates
14
discarded/obsoleted synonym
4
disease has feature
0
disease relationship
1
display label
0
distal to
7
distally connected to
59
distalmost part of
15
drains
133
dubious or contested synonym
13
during
639
eco subset
55
enables subfunction
0
ends
5
ends with
14
example of usage
1
existence ends at start of
3
existence ends during
39
existence ends during or before
596
existence ends with
11
existence overlaps
604
existence starts and ends during
19
existence starts at end of
3
existence starts during
22
existence starts during or after
1481
existence starts with
13
exists_during
1411
expand expression to
0
expert consultation and attribution required
2
extends_fibers_into
173
external_comment
26
external_definition
1784
external_ontology_notes
512
eye_upper_slim
0
filtered through
5
finishes axis
6
fma_set_term
1
function_notes
16
general_cell_types_upper_slim
0
happens during
1329
happens_during
1718
has branching part
3
has component activity
3
has component process
2
has cross section
6
has derived by descendant
2
has effector activity
7
has functional parent
408
has habitat
3
has high plasma membrane amount
67
has input
358
has ligand
2
has low plasma membrane amount
60
has member
117
has modifier
77904
has muscle antagonist
42
has negative regulatory component activity
1
has output
38
has parent hydride
84
has part structure that is capable of
0
has part that occurs in
4
has phenotype or disease
1
has positive regulatory component activity
1
has primary input
272
has primary input or output
154
has primary output
113
has quality
287
has regulatory component activity
3
has relative magnitude
80
has role
4251
has skeleton
91
has target end location
420
has target start location
32
has upheno source
54769
has_alternative_id
4
has_broad_synonym
2068
has_constituent_monomer
0
has_cross_section
3
has_exact_synonym
77804
has_gene_template
463
has_narrow_synonym
6969
has_no_connections_with
0
has_not_completed
0
has_obo_format_version
0
has_obo_namespace
0
has_output
0
has_output
65
has_related_synonym
41913
has_relational_adjective
0
has_scope
0
has_synonym_type
1
helper property (not for use in curation)
1
homology_notes
1097
immediate transformation of
129
immediately_deep_to
44
immediately_superficial_to
21
implements_design_pattern
0
in anterior side of
17
in central side of
0
in deep part of
10
in distal side of
8
in dorsal side of
12
in posterior side of
21
in proximal side of
7
in superficial part of
8
in taxon
343
in ventral side of
10
in_innermost_side_of
2
in_lateral_side_of
191
in_outermost_side_of
2
in_subset
0
increased in magnitude relative to
92
increased_in_magnitude_relative_to
3
increases_population_size_of
0
indicates that a synonym is used in an inconsistent or confusing way, typically between species
133
indirectly_supplies
9
inheres in
94253
inheres in part of
7865
innervated_by
114
innervates
150
interaction relation helper property
2
interacts with
694830
intersects midsagittal plane of
30
involved in negative regulation of
0
involved in or involved in regulation of
2
involved in positive regulation of
0
involved in regulation of
4
ipsilateral to
2
is a defining property chain axiom
0
is a defining property chain axiom where second argument is reflexive
0
is active in
2
is conjugate acid of
743
is conjugate base of
744
is direct form of
0
is enantiomer of
266
is homeomorphic for
0
is indirect form of
0
is kinase activity
1
is negative form of
0
is opposite of
0
is positive form of
0
is substituent group from
34
is symbiosis
1
is tautomer of
258
is ubiquitination
1
label
2
label approved by the SynGO project
23
lacks_part
0
lacks_plasma_membrane_part
0
latin term
3226
layer part of
2
layperson term
8167
left of
2
license
1
location_notes
1
logical-definition-view-relation
0
lumen of
5
luminal space of
152
molecular interaction relation helper property
2
molecularly interacts with
2
named class expression
1
negatively regulates characteristic
2
never in taxon
113
obsolete has active participant
12
obsolete related via dependence to
0
occurrent part of
1
occurs across
1
occurs_at
339
opposite to
5
orthogonal to
9
out of scope
0
output of
79
output_of
93
page
1
parallel to
0
parallel to
5
partially_surrounded_by
8
passes through
2
phalanx number
1
pharyngeal arch number
1
phenotype affects entity
39166
phenotype is associated with entity
34024
phosphorylates
1
plural form
137
plural term
719
plural term
0
positively regulates characteristic
3
postaxialmost part of
5
posteriorly connected to
3
preaxialmost part of
6
preceded_by
9
precedes
3
preferred term in the context of comparative anatomy
622
preferred term when talking about an instance of this class in Homo sapiens
93
preferred_root
0
primary affected entity
0
primary exhibited quality
1
primary related entity
0
process has causal agent
58
produces
48
protects
6
provenance_notes
1114
proximal to
9
proximally connected to
97
proximalmost part of
15
ray number
1
receives input from
1
reciprocal of
9
reciprocal_of
8
regulates activity of
1
regulates characteristic
3
regulates levels of
60
relation between physical entity and a process or stage
3
results in acquisition of features of
216
results in assembly of
79
results in breakdown of
1
results in changes to anatomical or cellular structure
8
results in development of
483
results in disassembly of
38
results in fusion of
30
results in growth of
30
results in maturation of
74
results in morphogenesis of
305
results in movement of
155
results in organization of
118
results in transport across
28
results in transport along
25
results in transport to from or in
22
results_in_change_to
0
results_in_complete_development_of
0
results_in_death_of
0
results_in_directed_movement_of
0
results_in_distribution_of
4
results_in_fission_of
6
rhombomere number
1
rib number
2
right of
2
secondary affected entity
0
sends output to
2
serially homologous to
6
sexually_homologous_to
11
shares ancestor with
1
shorthand
0
site_of
13
skeleton of
105
spatially disjoint from
2
starts
4
starts axis
6
starts with
29
starts_during
3
structure_notes
21
subdivision of
35
subset_property
119
substage of
154
superficial_to
18
supplies
181
surface of
24
surrounded by
60
surrounds
91
synonym that is inappropriate for amniotes
5
synonym that is inappropriate for mammals
2
synonym typically used in the context of vertebrate anatomy
4
synonym typically used in the context of human anatomy
1
synonym_type_property
46
taxon_notes
256
taxonomic disambiguation
443
term tracker item
0
terminology_notes
11
title
1
towards
4626
transformation of
57
transitively anteriorly connected to
2
transitively distally connected to
2
transitively proximally connected to
2
treat-xrefs-as-equivalent
0
trunk_part_of
2
universal
1
ventral_to
9
vertebra number
1
2D boundary of
0
Afrotropical Ecoregion
22
Aldabra Island Xeric Scrub Ecoregion
0
Antarctic front
1
Arctic front
1
Australasia Ecoregion
10
Carnarvon Xeric Shrublands Ecoregion
0
Central Ranges Xeric Shrub Ecoregion
0
Earth
2
East Saharan Montane Xeric Woodland Ecoregion
0
Eritrean Coastal Desert Ecoregion
0
Ethiopian Xeric Grasslands and Shrublands Ecoregion
0
Gibson Desert Ecoregion
0
Great Victoria Desert Ecoregion
0
Hobyo Grassland and Shrubland Ecoregion
0
Ile Europa and Bassas da India Ecoregion
0
Indo-Malay Ecoregion
2
Kalahari Xeric Savanna Ecoregion
0
Kaokoveld Desert Ecoregion
0
Madagascar Spiny Thickets Ecoregion
0
Madagascar Succulent Woodlands Ecoregion
0
Masai Xeric Grasslands and Shrublands Ecoregion
0
Nama Karoo Ecoregion
0
Namib Desert Ecoregion
0
Namibian Savanna Woodland Ecoregion
0
Northwestern Thorn Scrub Forests
0
Nullarbor Plains Xeric Shrubland Ecoregion
0
OBO foundry unique label
0
Oman and United Arab Emirates Ecoregion
0
Oman, Yemen, and Saudi Arabia Ecoregion
0
Pilbara Shrublands Ecoregion
0
Red Sea Coastal Desert Ecoregion
0
Simpson Desert Region
0
Socotran Archipelago Ecoregion
0
Sol
1
Solar radiation
0
Somali Montane Xeric Woodland Ecoregion
0
Succulent Karoo Ecoregion
0
Suni
1
Thar Desert
0
The Great Sandy-Tanami Desert Ecoregion
0
Western Australian Mulga Shrublands Ecoregion
0
World Ocean
1
Yemen and Saudi Arabia Ecoregion
0
Yemen, Saudi Arabia, and Oman Ecoregion
0
actively participates in
1
adjacent to
383
alternative term
18
alternative term
0
attached to
342
attached to part of
9
axiom holds for all times
33
axon synapses in
3
before
1
before or simultaneous with
2
branching part of
202
by_means
17
camcur
0
capable of
620
capable of part of
129
causally downstream of
1
causally related to
5
causally upstream of
12
confers advantage in
6
contained in
720
contains
10
contains process
146
continuous with
131
contributes to
0
core
1
curator note
41
definition source
1
denoted by
1
denotes
1
derived from ancestral fusion of
57
derives from
31
derives from part of
0
derives into
1
developmentally contributes to
1
developmentally induced by
42
developmentally induces
1
developmentally preceded by
6
developmentally related to
3
developmentally replaces
12
developmentally succeeded by
6
develops from
3552
develops from part of
9
develops in
7
develops into
51
device utilizes material
0
directly develops from
7
directly develops into
2
disposition of
1
dubious for taxon
22
during which ends
1
during which starts
1
ecologically related to
2
editor note
20
editor preferred term
0
elucidation
17
enabled by
10
enables
27
encompasses
0
ends after
1
ends during
4
evolutionarily related to
5
example
0
example to be eventually removed
1
expressed in
2
expresses
5
failed exploratory term
1
fasciculates with
6
formed as result of
15
function of
0
functionally related to
16
genomically related to
2
has 2D boundary
2
has axiom label
0
has component
96
has curation status
0
has dendrite location
1
has developmental contribution from
230
has developmental potential involving
4
has disposition
1
has end location
13
has fasciculating neuron projection
1
has function
2
has increased age-specific mortality rate
1
has muscle insertion
167
has muscle origin
157
has obsolescence reason
0
has part
623265
has participant
41
has phenotype
611824
has phenotypic analogue
1932
has plasma membrane part
480
has postsynaptic terminal in
2
has potential to develop into
302
has potential to developmentally contribute to
24
has potential to developmentally induce
1
has potential to directly develop into
1
has presynaptic terminal in
3
has sensory dendrite in
2
has soma location
86
has start location
17
has synaptic IO in region
3
has synaptic terminal in
6
has synaptic terminal of
0
has-input
3
has_age
84
has_participant
21
has_specified_output
0
immediately causally downstream of
0
immediately causally upstream of
2
immediately preceded by
214
immediately precedes
2
imported from
0
in branching relationship with
3
in_response_to
40
indirectly causally upstream of
0
indirectly negatively regulates
0
indirectly positively regulates
0
indirectly regulates
0
input of
4
involved in
1020789
is about
2
is_about
34
is_specified_output_of
0
located in
213
location of
13
logical macro assertion on an annotation property
0
member of
3
mereotopologically related to
8
metadata complete
6
metadata incomplete
2
mgpo_editor_note
0
mutually spatially disjoint with
476
negatively regulated by
2
negatively regulates
3488
nominally disjoint with
0
occurs in
21609
organizational term
2
overlaps
660
part of
58214
part of developmental precursor of
0
part of structure that is capable of
2
participates in
36
pending final vetting
82
phenotype of
1
placeholder removed
2
positively correlated with
0
positively regulated by
2
positively regulates
3485
preceded by
32
precedes
33
present in taxon
82
produced by
87
qualifier
4
qualifier
0
quality of
0
ready for release
18
receives synaptic input in region
4
receives synaptic input from neuron
0
regulated by
5
regulates
4005
related via localization to
3
requires discussion
17
results in developmental progression of
3314
results in formation of
156
results_in
1
role of
0
scheduled for obsoletion on or after
0
sends synaptic output to cell
0
simultaneous with
15
spatially coextensive with
0
synapsed by
3
synapsed to
4
temporal interpretation
0
temporally related to
11
term editor
0
term imported
1
term replaced by
0
term split
1
terms merged
589
to be replaced with external ontology term
1
tributary of
57
uncurated
1
valid_for_go_annotation_extension
28
valid_for_go_gp2term
13
valid_for_go_ontology
29
valid_for_gocam
29
BRAND NAME
283
INN
606
IUPAC NAME
2601
Synonyms based on current or previous gene name, ORF name, or ordered locus name
1312
Unique short label curated by PSI-MOD
3
Unique short label for PRO terms for display purposes; based on orthology
921
adjacent_to
4
derives_from
13
develops_from
61
end, days post fertilization
0
end, months post birth
0
end, years post birth
0
ends during
424
expand assertion to
0
has_part
3
has_quality
11
lacks_part
273
member_of
2
namespace-id-rule
0
only_in_taxon
1510
overlaps
3
part of
100
part of
97
part_of
25
preceded by
87
see also
7
start, days post fertilization
0
start, months post birth
0
start, years post birth
0
starts during
1178
URI
http://purl.obolibrary.org/obo/uberon/core#DEPRECATED
label
A historic synonym, no longer encouraged
http://www.w3.org/2000/01/rdf-schema#subPropertyOf
synonym_type_property
Linked from
Axiom
(
uPheno2
)