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CHEBIhttp://metadb.riken.jp/bioresource/ontology/CHEBI

Chemical Entities of Biological Interest Ontology
(Original site: https://www.ebi.ac.uk/chebi/)

EDAMhttp://metadb.riken.jp/bioresource/ontology/EDAM

EDAM bioinformatics operations, types of data, data formats, identifiers, and topics
(Original site: http://edamontology.org)

FALDOhttp://metadb.riken.jp/bioresource/ontology/FALDO

Feature Annotation Location Description Ontology
(Original site: http://biohackathon.org/resource/faldo)

GOhttp://metadb.riken.jp/bioresource/ontology/GO

Gene Ontology
(Original site: https://bioportal.bioontology.org/ontologies/GO)

MAhttp://metadb.riken.jp/bioresource/ontology/MA

Mouse Adult Gross Anatomy
(Original site: https://bioportal.bioontology.org/ontologies/MA)

MCCVhttp://metadb.riken.jp/bioresource/ontology/MCCV

Microbial Culture Collection Vocabulary
(Original site: https://bioportal.bioontology.org/ontologies/MCCV)

MPhttp://metadb.riken.jp/bioresource/ontology/MP

Mammalian Phenotype Ontology
(Original site: https://bioportal.bioontology.org/ontologies/MP)

NCBITaxonhttp://metadb.riken.jp/bioresource/ontology/NCBITaxon

NCBI Organismal Classification (NCBITaxon)
(Original site: http://wiki.obofoundry.org/wiki/index.php/NCBITaxon:Main_Page)

PATOhttp://metadb.riken.jp/bioresource/ontology/PATO

Phenotypic Quality Ontology
(Original site: https://bioportal.bioontology.org/ontologies/PATO)

POhttp://metadb.riken.jp/bioresource/ontology/PO

Plant Ontology
(Original site: http://planteome.org)

SDGshttp://metadb.riken.jp/bioresource/ontology/SDGs

Sustainable Development Goals ontology

SOhttp://metadb.riken.jp/bioresource/ontology/SO

Sequence Types and Features Ontology
(Original site: http://www.sequenceontology.org/)

About RIKEN Meta Database

This database portal site is used to provide information on RIKEN's various life science databases to order to help researchers around the world make full use of RIKEN's research results.

The database provides life-science data in the bases of standardized metadata techniques including semantic web and Resource Description Framework (RDF).


W3C Dataset Descriptions: HCLS Community Profile
HCLSProfile_MataDB_ALL.ttl

Long-term recommendations for RIKEN's life sciences database platform (final report)

The direction and implementation guidelines for RIKEN databases and metadata maintenance have been discussed at the Database Working Group established within the Bioinformatics Exploratory Committee which examines technologies related to RIKEN's bioinformatics. The result of the discussion was summarized as 'Long-term recommendations for RIKEN's life sciences database platform (final report)'. The RIKEN MetaDatabase has been developed and published based on this recommendation.

Download the PDF file: LongTermRecommendataions_e.pdf