SO
Sequence Types and Features Ontology
0
Alliance of Genome Resources
0
BAC_clone
0
DBVAR
0
DNA_invertase_target_sequence
0
DNA_replication_mode
0
H3K27_acylation_site
0
PAC_clone
0
RNA modification
0
RNA_polymerase_promoter
0
RNA_replication_mode
0
RNA_stability_element
0
RNApol_III_promoter_type_1_region
0
RNApol_III_promoter_type_2_region
0
RNApol_II_promoter_region
0
Sequence_Ontology
0
TSS_region
164748
YAC_clone
0
adjacent_to
4
alternately_spliced_gene_encoding_greater_than_one_transcript
0
alternately_spliced_gene_encodeing_one_transcript
0
alternatively_spliced_transcript_encoding_greater_than_1_polypeptide_different_start_codon_different_stop_codon_coding_regions_non_overlapping
0
alternatively_spliced_gene_encoding_greater_than_1_polypeptide_coding_regions_overlapping
0
amino acid 1 letter code
0
amino acid 3 letter code
0
amino acid modification
0
associated_with
0
assortment_derived_aneuploid
0
assortment_derived_deficiency
0
assortment_derived_deficiency_plus_duplication
0
assortment_derived_duplication
0
bacterial_RNApol_promoter_region
0
biosapiens
0
canonical_splice_site
0
clone_attribute
0
clone_insert_start
0
cloned
0
cloned_cDNA
0
cloned_genomic
0
complete_evidence_for_feature
0
computed_feature
0
computed_feature_by_similarity
0
connects_on
0
consider
0
contained_by
0
contains
0
cosmid_clone
0
covalent_binding_site
0
cross_link
0
database_cross_reference
20388
dbsnp variant terms
0
definition
80435
delete
0
delete_U
0
derives_from
13
disconnected_from
0
disulfide_bond
0
edit_operation
0
edited_by_A_to_I_substitution
0
edited_by_C_insertion_and_dinucleotide_insertion
0
edited_by_C_to_U_substitution
0
edited_by_G_addition
0
edited_from
0
edited_to
0
eight_cutter_restriction_site
0
end_overlapping_gene
0
engineered_DNA
0
enhanceosome
0
enhancer_attribute
0
ensembl variant terms
0
evidence_for_feature
0
exemplar_of
0
finished_by
0
finishes
0
fosmid_clone
0
four_cutter_restriction_site
0
frame_restoring_sequence_variant
0
frameshift_sequence_variation
0
gained
0
gene_by_genome_location
0
gene_by_organelle_of_genome
0
gene_by_polyadenylation_attribute
0
gene_by_transcript_attribute
0
gene_class
0
gene_group_regulatory_region
0
gene_not_polyadenylated
0
gene_part
0
gene_sensu_your_favorite_organism
0
genome_of
0
guided_by
0
guides
0
has_alternative_id
4
has_broad_synonym
2068
has_exact_synonym
77804
has_integral_part
0
has_narrow_synonym
6969
has_obo_format_version
0
has_obo_namespace
0
has_origin
0
has_part
3
has_quality
11
has_related_synonym
41913
has_scope
0
has_synonym_type
1
homologous_to
0
in_subset
0
insert
0
insert_AA
0
insert_AU
0
insert_C
0
insert_CU
0
insert_G
0
insert_GC
0
insert_GU
0
insert_U
0
insert_dinucleotide
0
integral_part_of
0
integrase_coding_region
0
intron_attribute
0
intronic_splicing_enhancer
0
invert
0
is_consecutive_sequence_of
0
lambda_clone
0
lost
0
mRNA_by_polyadenylation_status
0
mRNA_not_polyadenylated
0
match_set
0
maximally_overlaps
0
member_of
2
mutation_causing_inframe_polypeptide_N_terminal_elongation
0
mutation_causing_out_of_frame_polypeptide_N_terminal_elongation
0
mutation_causing_out_of_frame_polypeptide_C_terminal_elongation
0
mutation_causing_polypeptide_C_terminal_elongation
0
mutation_causing_polypeptide_N_terminal_elongation
0
mutaton_causing_inframe_polypeptide_C_terminal_elongation
0
nested_region
0
nested_repeat
0
nested_transposon
0
non_canonical_splice_site
0
non_capped_primary_transcript
0
non_covalent_binding_site
0
non_functional_homolog_of
0
nuclear_mitochondrial
0
orthologous_to
0
overlaps
3
paralogous_to
0
part_of
25
partial_evidence_for_feature
0
phagemid_clone
0
plasmid_clone
0
polycistronic_gene
0
polypeptide_post_translational_processing_affected
0
position_of
0
predicted_ab_initio_computation
0
primary_transcript_attribute
0
processed
0
processed_from
0
processed_into
0
processed_transcript_attribute
0
promoter_region
0
pseudogene_attribute
0
rRNA_21S
0
rRNA_21S_gene
0
reagent_attribute
0
recombined_from
0
recombined_to
0
repeat_family
0
repetitive_element
0
restriction_enzyme_cut_site
0
rolling_circle
0
sequence variant_affecting_transcript_stability
0
sequence_attribute
7
sequence_collection
474
sequence_feature
340400
sequence_feature_locating_method
0
sequence_of
0
sequence_operation
0
sequence_replication_mode
0
sequence_variant
3
sequence_variant_affecting_transcript_secondary_structure
0
sequence_variant_affecting_3D_structure_of_polypeptide
0
sequence_variant_affecting_copy_number
0
sequence_variant_affecting_editing
0
sequence_variant_affecting_gene_structure
0
sequence_variant_affecting_polyadenylation
0
sequence_variant_affecting_polypeptide_function
0
sequence_variant_affecting_rate_of_transcription
0
sequence_variant_affecting_regulatory_region
0
sequence_variant_affecting_splice_acceptor
0
sequence_variant_affecting_splice_donor
0
sequence_variant_affecting_splicing
0
sequence_variant_affecting_transcript_processing
0
sequence_variant_affecting_transcription
0
sequence_variant_affecting_translational_product
0
sequence_variant_affecting_level_of_translational_product
0
sequence_variant_affecting_polypeptide_amino_acid_sequence
0
sequence_variant_causing_non_synonymous_codon_change_in_transcript
0
sequence_variant_causing_conservative_missense_codon_change_in_transcript
0
sequence_variant_causing_loss_of_function_of_polypeptide
0
sequence_variant_causing_conservative_amino_acid_substitution
0
sequence_variant_causing_nonsense_codon_change_in_transcript
0
sequence_variant_causing_nonconservative_missense_codon_change_in_transcript
0
sequence_variant_causing_cryptic_splice_donor_activation
0
sequence_variant_causing_missense_codon_change_in_transcript
0
sequence_variant_causing_plus_1_frameshift_mutation
0
sequence_variant_causes_exon_loss
0
sequence_variant_causes_intron_gain
0
sequence_variant_causing_amino_acid_deletion
0
sequence_variant_causing_amino_acid_insertion
0
sequence_variant_causing_amino_acid_substitution
0
sequence_variant_causing_conformational_change
0
sequence_variant_causing_cryptic_splice_activation
0
sequence_variant_causing_gene_fusion
0
sequence_variant_causing_inactive_catalytic_site
0
sequence_variant_causing_minus_1_frameshift
0
sequence_variant_causing_minus_2_frameshift
0
sequence_variant_causing_no_3D_structural_change
0
sequence_variant_causing_no_change_in_transcript
0
sequence_variant_causing_plus_2_frameshift
0
sequence_variant_causing_polypeptide_elongation
0
sequence_variant_causing_polypeptide_fusion
0
sequence_variant_causing_polypeptide_truncation
0
sequence_variant_causing_polypeptide_localization_change
0
sequence_variant_causing_complex_change_of_translational_product
0
sequence_variant_causing_polypeptide_post_translational_processing_change
0
sequence_variant_causing_synonymous_codon_change_in_transcript
0
sequence_variant_causing_compensatory_transcript_secondary_structure_mutation
0
sequence_variant_causing_terminator_codon_change_in_transcript
0
sequence_variant_causing_cryptic_splice_acceptor_activation
0
sequence_variant_causing_gain_of_function_of_polypeptide
0
sequence_variant_causing_inactive_ligand_binding_site
0
sequence_variant_causing_nonconservative_amino_acid_substitution
0
sequence_variant_causing_initiator_codon_change_in_transcript
0
sequence_variant_causing_complex_3D_structural_change
0
sequence_variant_causing_amino_acid_coding_codon_change_in_transcript
0
sequence_variant_causing_no_change_of_translational_product
0
sequence_variant_causing_partial_loss_of_function_of_polypeptide
0
sequence_variant_decreasing_rate_of_transcription
0
sequence_variant_decreasing_transcript_stability
0
sequence_variant_decreasing_level_of_translation_product
0
sequence_variant_effect
0
sequence_variant_increasing_rate_of_transcription
0
sequence_variant_increasing_transcript_stability
0
sequence_variant_increasing_level_of_translation_product
0
sequence_variant_obs
0
sequence_variation_affecting_coding_sequence
0
sequence_variation_affecting_level_of_transcript
0
sequence_variation_affecting_reading_frame
0
sequence_variation_affecting_transcript
0
sequence_variation_affecting_transcript_sequence
0
sequence_variation_decreasing_level_of_transcript
0
sequence_variation_increasing_level_of_transcript
0
similar_to
0
site
0
six_cutter_restriction_site
0
splicing_feature
0
started_by
0
starts
0
status_of_coding_sequence
0
stop_codon_readthrough
0
stop_codon_redefinition_as_pyrrolysine
0
stop_codon_redefinition_as_selenocysteine
0
subset_property
119
substitute
0
substitute_A_to_I
0
substitute_C_to_U
0
synonym_type_property
46
term replaced by
0
theta_replication
0
trans_spliced_from
0
trans_spliced_to
0
transcribed_from
0
transcribed_region
0
transcribed_to
0
transcript_edited_by_U_insertion/deletion
0
transcript_feature
0
transcript_sequence_variant
0
transcript_with_readthrough_stop_codon
0
transcription_regulatory_region
0
transgene_attribute
0
translates_to
0
translation_of
0
translocate
0
transposable_element_attribute
0
type_II_enzyme_restriction_site
0
type_I_enzyme_restriction_site
0
unequally_crossed_over
0
variant annotation term
0
variant_of
0
vertebrate_immune_system_feature
0
URI
http://purl.obolibrary.org/obo/SO_0002117
Label
has_obo_namespace
sequence
http://www.geneontology.org/formats/oboInOwl#created_by
kareneilbeck
http://www.geneontology.org/formats/oboInOwl#creation_date
2016-07-18T14:27:21Z
http://www.geneontology.org/formats/oboInOwl#id
SO:0002117
http://www.w3.org/2002/07/owl#deprecated
true